BioMCP

Predict variant effects on gene regulation using Google DeepMind's AlphaGenome. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your analysis strategy! AlphaGenome provides state-of-the-art pred…

Fetch detailed information for a specific article. Retrieves the full abstract and available text for an article by its identifier. Supports: - PubMed IDs (PMID) for published articles - …

Search PubMed/PubTator3 for research articles and preprints. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Use this tool to find scientific literature ABOUT genes, vari…

Get detailed disease information from MyDisease.info. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to understand your research goal! Provides real-time disease annotations including: - Official d…

Get detailed drug/chemical information from MyChem.info. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to understand your research goal! This tool provides comprehensive drug information including: …

Perform functional enrichment analysis on a gene list. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your enrichment analysis strategy! Inspired by gget enrichr (Luebbert & Pachter, 2023). …

Fetch comprehensive details for a specific biomedical record. This tool retrieves full information for articles, clinical trials, genetic variants, genes, drugs, or diseases using their unique id…

Get detailed gene information from MyGene.info. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to understand your research goal! Provides real-time gene annotations including: - Official gene name …

Search for biomarkers in the NCI Clinical Trials database. Searches for biomarkers used in clinical trial eligibility criteria. This is essential for precision medicine trials that select patient…

Search NCI's controlled vocabulary of cancer conditions. Searches the National Cancer Institute's curated database of cancer conditions and diseases used in clinical trials. This is different fro…

Get detailed information about a specific intervention from NCI. Retrieves comprehensive details about an intervention including: - Full name and synonyms - Intervention type and category …

Search for interventions in the NCI Clinical Trials database. Searches the National Cancer Institute's curated database of interventions used in cancer clinical trials. This includes: - FDA-a…

Get detailed information about a specific organization from NCI. Retrieves comprehensive details about an organization including: - Full name and aliases - Address and contact information …

Search for organizations in the NCI Clinical Trials database. Searches the National Cancer Institute's curated database of organizations involved in cancer clinical trials. This includes: - A…

Get detailed information for a specific FDA adverse event report. Retrieves complete details including: - Patient demographics and medical history - All drugs involved and dosages - Compl…

Search FDA adverse event reports (FAERS) for drug safety information. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Searches FDA's Adverse Event Reporting System for: …

Get detailed FDA drug approval information for a specific application. Returns comprehensive approval details including: - Full product list with dosage forms and strengths - Complete submiss…

Search FDA drug approval records from Drugs@FDA database. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Returns information about: - Application numbers and sponsor…

Get detailed information for a specific FDA device event report. Retrieves complete device event details including: - Device identification and specifications - Complete event narrative -…

Search FDA device adverse event reports (MAUDE) for medical device issues. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Searches FDA's device adverse event database fo…

Get complete FDA drug label information by set ID. Retrieves the full prescribing information including: - Complete indications and usage text - Detailed dosing instructions - All warning…

Search FDA drug product labels (SPL) for prescribing information. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Searches official FDA drug labels for: - Approved in…

Get detailed FDA drug recall information for a specific recall. Returns complete recall details including: - Full product description and code information - Complete reason for recall - D…

Search FDA drug recall records from the Enforcement database. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Returns recall information including: - Classification (…

Get detailed FDA drug shortage information for a specific drug. Returns comprehensive shortage details including: - Complete timeline of shortage - Detailed reason for shortage - All affe…

Search FDA drug shortage records. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Returns shortage information including: - Current shortage status - Shortage sta…

Search biomedical literature, clinical trials, genetic variants, genes, drugs, and diseases. ⚠️ IMPORTANT: Have you used the 'think' tool first? If not, STOP and use it NOW! The 'think' tool is R…

REQUIRED FIRST STEP: Perform structured sequential thinking for ANY biomedical research task. 🚨 IMPORTANT: You MUST use this tool BEFORE any search or fetch operations when: - Researching ANY bio…

Fetch comprehensive details for a specific clinical trial. Retrieves all available information for a clinical trial by its NCT ID. This includes protocol details, locations, outcomes, and referen…

Fetch contact and location details for a clinical trial. Retrieves all study locations including: - Facility names and addresses - Principal investigator information - Contact details (wh…

Fetch outcome measures and results for a clinical trial. Retrieves detailed outcome information including: - Primary outcome measures - Secondary outcome measures - Results data (if avail…

Fetch core protocol information for a clinical trial. Retrieves essential protocol details including: - Official title and brief summary - Study status and sponsor information - Study des…

Fetch publications and references for a clinical trial. Retrieves all linked publications including: - Published results papers - Background literature - Protocol publications - Relat…

Search ClinicalTrials.gov for clinical studies. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Comprehensive search tool for finding clinical trials based on multiple cr…

Fetch comprehensive details for a specific genetic variant. Retrieves all available information for a variant including: - Gene location and consequences - Population frequencies across datab…

Search MyVariant.info for genetic variant DATABASE RECORDS. ⚠️ PREREQUISITE: Use the 'think' tool FIRST to plan your research strategy! Important: This searches for variant DATABASE RECORDS (frequen…